PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G143000.2
Common NamePOPTR_0003s14300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Nin-like
Protein Properties Length: 954aa    MW: 104676 Da    PI: 5.4899
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G143000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.56.3e-29574625152
              RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         aek+isle+l++yF++++kdAAk Lgvc+T++KriCRq+GI+RWP+Rki+++
  Potri.003G143000.2 574 AEKTISLEVLQQYFAGSLKDAAKRLGVCPTTMKRICRQHGISRWPSRKINKV 625
                         589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.302564645IPR003035RWP-RK domain
PfamPF020426.0E-26577625IPR003035RWP-RK domain
SuperFamilySSF542773.6E-22850941No hitNo description
SMARTSM006665.5E-25857939IPR000270PB1 domain
PROSITE profilePS5174524.619857939IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2406.6E-26857938No hitNo description
CDDcd064071.45E-34858938No hitNo description
PfamPF005646.8E-18858938IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0010118Biological Processstomatal movement
GO:0010167Biological Processresponse to nitrate
GO:0042128Biological Processnitrate assimilation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 954 aa     Download sequence    Send to blast
MQKPIEGRGV GGGGGEPEGM KSMELDLDLD NSWPLDQISF MSSNPMSPFL ISTSTEQPCS  60
PLWAFSDAVD DRLAATASGQ ASPAFAAAAA PRLSDYPILL TCNPNLITES QGENDDNSKL  120
PSPFLGLMPI DNPDGYCMIK ERMTQALRYF KESTEQHVLA QVWAPVKNGG QHVLTTSGQP  180
FVLDPHSNGL HQYRMVSLMY MFSVDGESDR ELGLPGRVFR QKSPEWTPNV QYYSSKEYSR  240
LDHALRYNVR GTLALPVFEP SGQSCVGVLE LIMNSQKINY APEVDKVCKA LEAVNLKSSE  300
ILDPPSIQIC NEGRQNALSE ILEILTMVCE THKLPLAQTW VPCIHRSVLT YGGGLKKSCT  360
SFDGNCNGQV CMSTTDVAFY VVDARMWGFR EACLEHHLQK GQGVAGRAFL SQNSCFCPDI  420
TQFCKTEYPL VHYARMFGLT SCFAIFLRSS YTGDDDYILE FFLPPSITDS HEQKTFLGSI  480
LATMKQDFQS LKVASGMDLE EEGFVEMIEA TTNGRLECIQ IPQPTKSPPG DNMLPNEGHI  540
EQIDSEKNKL MFDLDVIKNG GRTKKPTERK RGKAEKTISL EVLQQYFAGS LKDAAKRLGV  600
CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKWVIESVQ GTEGTFDLTP LTTSPLHVAD  660
GTISWPSNLN GSNQQTSPNS KPPEYHGNRN GSPTCRKPGS DGQAGSNRSK KRSGSRDGSA  720
GTPTSHDSCQ GSPENESAPV KDPSVSPVHE RCIKAGGSPG LALQQTKEQN LSSAYSIPDA  780
LVATEAHEPF GGMLIEDAGS SKDLRNLCPA VAEAIVDERV PESSWTDPPC FNMLPTQMFA  840
APLHAIPQAT PRQEMKSVTI KATYREDVIR FRISLSSGIV ELKEEVAKRL KLEVGTFDIK  900
YLDDDQEWVL IACDADLLEC MDVSRSSSSN IIRLSVHDAN ANLGSSCEST GEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00449DAPTransfer from AT4G24020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303671.10.0RWP-RK domain-containing family protein
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLB9GXT60.0B9GXT6_POPTR; RWP-RK domain-containing family protein
STRINGPOPTR_0003s14300.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7